<?xml version="1.0" encoding="UTF-8"?><MIBBI_Portal_Registrants xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:noNamespaceSchemaLocation="http://mibbi.sourceforge.net/misc/MIMI_v2.0.xsd">	<!-- Last updated 2012-05-17 by Chris Taylor - 41 checklists described, though the MIBBI Portal only shows 36 - MIGS/MIMS and MIMARKS are now combined as MIxS and the MIAME extensions are no longer seen as separate projects. -->	<MIMI>		<MI_Checklist_Acronym>AMIS</MI_Checklist_Acronym>		<General_Features>			<Domain>Literature standard</Domain>			<Document_Type>Primary checklist</Document_Type>			<Group>ANISEED Group</Group>			<Main_Website>http://aniseed-ibdm.univ-mrs.fr/</Main_Website>			<MI_Checklist_Name>Article Minimum Information Standard</MI_Checklist_Name>			<Current_Version_Designation>1.0</Current_Version_Designation>			<Release_Date_for_Current_Version>September 2010</Release_Date_for_Current_Version>		</General_Features>		<Contact_Person>			<Full_Name>Delphine DAUGA</Full_Name>			<Email>Delphine.DAUGA@ibdml.univmed.fr</Email>		</Contact_Person>		<Key_Concepts>			<Concept>Literature</Concept>			<Concept>Expression data</Concept>			<Concept>Phenotype data</Concept>			<Concept>Regulatory region data</Concept>		</Key_Concepts>		<Bibliography>			<PMID>20647237</PMID>			<DOI>10.1101/gr.108175.110</DOI>			<URL>http://genome.cshlp.org/content/20/10/1459</URL>		</Bibliography>		<Location_of_Documents>			<Description>This standard describes for each experiment the mandatory (and useful) information that should be mentioned in literature articles to facilitate the curation process.</Description>			<URL>http://aniseed-ibdm.univ-mrs.fr/AMIS.php</URL>		</Location_of_Documents>	</MIMI>	<MIMI>		<MI_Checklist_Acronym>BioDBCore</MI_Checklist_Acronym>		<General_Features>			<Domain>Biological databases</Domain>			<Document_Type>Primary checklist</Document_Type>			<Group>Biocuration Society</Group>			<Main_Website>http://biocurator.org/</Main_Website>			<MI_Checklist_Name>Core Attributes of Biological Databases</MI_Checklist_Name>			<Current_Version_Designation>n/a</Current_Version_Designation>			<Release_Date_for_Current_Version>n/a</Release_Date_for_Current_Version>		</General_Features>		<Contact_Person>			<Full_Name>Pascale Gaudet</Full_Name>			<Email>pascale.gaudet@isb-sib.ch</Email>		</Contact_Person>		<Key_Concepts>			<Concept>Biological databases</Concept>			<Concept>Database administration</Concept>			<Concept>Data curation policy</Concept>			<Concept>Data file formats</Concept>		</Key_Concepts>		<Bibliography>			<DOI>10.1093/nar/gkq1173</DOI>			<URL>http://nar.oxfordjournals.org/content/early/2010/11/17/nar.gkq1173</URL>		</Bibliography>	</MIMI>	<MIMI>		<MI_Checklist_Acronym>CIMR</MI_Checklist_Acronym>		<General_Features>			<Domain>Metabolomics</Domain>			<Document_Type>Minimal requirements for reporting metabolomics experiments</Document_Type>			<Group>Metabolomics Standards Initiative</Group>			<Main_Website>http://msi-workgroups.sourceforge.net/</Main_Website>			<MI_Checklist_Name>Core Information for Metabolomics Reporting</MI_Checklist_Name>			<Current_Version_Designation>n/a</Current_Version_Designation>			<Release_Date_for_Current_Version>n/a</Release_Date_for_Current_Version>			<General_Comments>Note that there are several para-autonomous groups within MSI — these sub-projects are enumerated in the concepts list below.</General_Comments>		</General_Features>		<Contact_Person>			<Full_Name>Jules Griffin</Full_Name>			<Email>jlg40@mole.bio.cam.ac.uk</Email>		</Contact_Person>		<Contact_Person>			<Full_Name>Oliver Fiehn</Full_Name>			<Email>ofiehn@ucdavis.edu</Email>		</Contact_Person>		<Key_Concepts>			<Concept>Biological context: In vivo / mammalian biology</Concept>			<Concept>Biological context: Plant biology</Concept>			<Concept>Biological context: In vitro biology / microbiology</Concept>			<Concept>Biological context: Environmental analysis</Concept>			<Concept>Chemical analysis</Concept>			<Concept>Data processing</Concept>		</Key_Concepts>		<Location_of_Documents>			<URL>http://msi-workgroups.sourceforge.net/</URL>		</Location_of_Documents>	</MIMI>	<MIMI>		<MI_Checklist_Acronym>GIATE</MI_Checklist_Acronym>		<General_Features>			<Domain>Cancer therapy experiments</Domain>			<Document_Type>Primary checklist</Document_Type>			<Group>UCL</Group>			<Main_Website>http://www.antibodysociety.org/data/datastandards.php</Main_Website>			<MI_Checklist_Name>Guidelines for Information About Therapy Experiments</MI_Checklist_Name>			<Current_Version_Designation>1.0</Current_Version_Designation>			<Release_Date_for_Current_Version>n/a</Release_Date_for_Current_Version>		</General_Features>		<Contact_Person>			<Full_Name>Alejandra Gonzalez Beltran</Full_Name>			<Email>a.gonzalezbeltran@cs.ucl.ac.uk</Email>		</Contact_Person>		<Contact_Person>			<Full_Name>May Yong</Full_Name>			<Email>m.yong@ucl.ac.uk</Email>		</Contact_Person>		<Contact_Person>			<Full_Name>Richard Begent</Full_Name>			<Email>r.begent@ucl.ac.uk</Email>		</Contact_Person>		<Key_Concepts>			<Concept>Cancer therapy experiment design</Concept>			<Concept>Molecular, Pre-clinical and Clinical models</Concept>			<Concept>Therapy effects and outcomes</Concept>		</Key_Concepts>		<Bibliography>			<PMID>19224941</PMID>			<DOI>10.1093/protein/gzp003</DOI>			<URL>http://www.ncbi.nlm.nih.gov/pubmed/19224941</URL>		</Bibliography>		<Bibliography>			<PMID>21062155</PMID>			<DOI>10.2217/fon.10.108</DOI>			<URL>http://www.futuremedicine.com/doi/abs/10.2217/fon.10.108</URL>		</Bibliography>	</MIMI>	<MIMI>		<MI_Checklist_Acronym>MIABE</MI_Checklist_Acronym>		<General_Features>			<Domain>Bioactive entities</Domain>			<Document_Type>Primary guidelines</Document_Type>			<Group>European Bioinformatics Institute's Industry Group</Group>			<Main_Website>T.B.A.</Main_Website>			<MI_Checklist_Name>Minimum Information About a Bioative Entity</MI_Checklist_Name>			<Current_Version_Designation>n/a</Current_Version_Designation>			<Release_Date_for_Current_Version>n/a</Release_Date_for_Current_Version>			<General_Comments>Reporting requirements for the publication of data on one or a series of bioactive entities, such as pharmaceuticals and pesticides. A paper is being produced; initially through the EBI Industry Group, but consulting more broadly prior to publication.</General_Comments>		</General_Features>		<Contact_Person>			<Full_Name>Sandra Orchard</Full_Name>			<Email>orchard[@]ebi.ac.uk</Email>		</Contact_Person>		<Key_Concepts>			<Concept>bioactive entity</Concept>			<Concept>pharmaceutical</Concept>			<Concept>neutraceutical</Concept>			<Concept>pesticide</Concept>			<Concept>drug</Concept>		</Key_Concepts>		<Location_of_Documents>			<Description>Version 0.4 of the MIABE document</Description>			<URL>http://www.psidev.info/index.php?q=node/394</URL>		</Location_of_Documents>	</MIMI>	<MIMI>		<MI_Checklist_Acronym>MIABiE</MI_Checklist_Acronym>		<General_Features>			<Domain>Biofilms</Domain>			<Document_Type>Primary guidelines</Document_Type>			<Group>BiofOmics Project</Group>			<Main_Website>http://biofomics.org/</Main_Website>			<MI_Checklist_Name>Minimum Information About a Biofilm Experiment</MI_Checklist_Name>			<Current_Version_Designation>n/a</Current_Version_Designation>			<Release_Date_for_Current_Version>n/a</Release_Date_for_Current_Version>			<General_Comments>A paper is being produced, initially through the BiofOmics Project Members and Advisory Board, but consulting more broadly prior to publication.</General_Comments>		</General_Features>		<Contact_Person>			<Full_Name>Nuno Filipe Azevedo</Full_Name>			<Email>nazevedo[@]fe.up.pt</Email>		</Contact_Person>		<Key_Concepts>			<Concept>experiment overview</Concept>			<Concept>biofilm formation description</Concept>			<Concept>biofilm-forming platform details</Concept>			<Concept>analytical methods description</Concept>			<Concept>data analysis</Concept>		</Key_Concepts>	</MIMI>	<MIMI>		<MI_Checklist_Acronym>MIACA</MI_Checklist_Acronym>		<General_Features>			<Domain>Functional Genomics and Systems Biology</Domain>			<Document_Type>Primary guidelines</Document_Type>			<Group>The Cell Based Assay Standards Consortium</Group>			<Main_Website>http://miaca.sourceforge.org/</Main_Website>			<MI_Checklist_Name>Minimal Information About a Cellular Assay</MI_Checklist_Name>			<Current_Version_Designation>0.9</Current_Version_Designation>			<Release_Date_for_Current_Version>2006-10-10</Release_Date_for_Current_Version>			<General_Comments>Draft based on community interactions and support; public distribution for comment.</General_Comments>		</General_Features>		<Contact_Person>			<Full_Name>Dr Stefan Wiemann</Full_Name>			<Email>s.wiemann@dkfz.de</Email>		</Contact_Person>		<Key_Concepts>			<Concept>eukaryotes</Concept>			<Concept>cell lines</Concept>			<Concept>perturbations</Concept>			<Concept>assays</Concept>			<Concept>phenotypic changes</Concept>			<Concept>sample processing</Concept>			<Concept>data processing</Concept>			<Concept>annotation</Concept>		</Key_Concepts>		<Location_of_Documents>			<Description>All documents</Description>			<URL>http://sourceforge.net/project/showfiles.php?group_id=158121</URL>		</Location_of_Documents>		<Location_of_Documents>			<Description>MIACA abstract</Description>			<URL>http://mibbi.sourceforge.net/projects/MIACA/docs/MIACA_Abstract.txt</URL>		</Location_of_Documents>	</MIMI>	<MIMI>		<MI_Checklist_Acronym>MIAME</MI_Checklist_Acronym>		<General_Features>			<Domain>Microarray Technology</Domain>			<Document_Type>Checklist</Document_Type>			<Group>MGED</Group>			<Main_Website>http://www.mged.org/miame</Main_Website>			<MI_Checklist_Name>Minimum Information About a Microarray Experiment</MI_Checklist_Name>			<Current_Version_Designation>1.1</Current_Version_Designation>			<Release_Date_for_Current_Version>2003</Release_Date_for_Current_Version>			<General_Comments>A shorter version is coming soon</General_Comments>		</General_Features>		<Contact_Person>			<Full_Name>Alvis Brazma</Full_Name>			<Email>brazma@ebi.ac.uk</Email>		</Contact_Person>		<Bibliography>			<PMID>11726920</PMID>			<DOI>10.1038/ng1201-365</DOI>			<URL>http://www.nature.com/ng/journal/v29/n4/abs/ng1201-365.html</URL>		</Bibliography>	</MIMI>	<MIMI>		<MI_Checklist_Acronym>MIAME/Env</MI_Checklist_Acronym>		<General_Features>			<Domain>Environmental transcriptomics</Domain>			<Document_Type>Extension</Document_Type>			<Group>Environmental Genomics Working Group</Group>			<Main_Website>http://nebc.nox.ac.uk/miame/miame_env.html</Main_Website>			<MI_Checklist_Name>Minimum Information about an ENVironmental transcriptomic experiment</MI_Checklist_Name>			<Current_Version_Designation>1.6</Current_Version_Designation>			<Release_Date_for_Current_Version>2003-08</Release_Date_for_Current_Version>			<General_Comments>MIAME/Env was developed to extend MIAME, but is being applied to genomic and metabolomic MICs as well.  We are in the process of generating a parent document with a generic Env specification.</General_Comments>		</General_Features>		<Contact_Person>			<Full_Name>Norman Morrison</Full_Name>			<Email>morrison@cs.man.ac.uk</Email>		</Contact_Person>		<Key_Concepts>			<Concept>environment</Concept>			<Concept>geographic location</Concept>			<Concept>environmental condition</Concept>			<Concept>biological treatment</Concept>		</Key_Concepts>		<Bibliography>			<PMID>16901223</PMID>			<DOI>10.1089/omi.2006.10.172</DOI>			<URL>http://www.liebertonline.com/doi/abs/10.1089/omi.2006.10.172</URL>		</Bibliography>		<Location_of_Documents>			<Description>The MIAME/Env checklist as a word doc</Description>			<URL>http://nebc.nox.ac.uk/miame/MIAME1.6-envDraft-2.pdf</URL>		</Location_of_Documents>	</MIMI>	<MIMI>		<MI_Checklist_Acronym>MIAME/Nutr</MI_Checklist_Acronym>		<General_Features>			<Domain>Nutrigenomics</Domain>			<Document_Type>Extension, draft of a Primary</Document_Type>			<Group>RSBI Nutrigenomics Working Group (NWG)</Group>			<Main_Website>http://www.mged.org/Workgroups/rsbi/rsbi.html</Main_Website>			<MI_Checklist_Name>Minimum Information about a Nutrigenomics experiment</MI_Checklist_Name>			<Current_Version_Designation>MIAME/Nutr v1 (based on MIAME v1.1)</Current_Version_Designation>			<Release_Date_for_Current_Version>2004-04</Release_Date_for_Current_Version>			<General_Comments>MIAME/Nutr was developed to extend MIAME for array-based nutrigenomics experiments. However, there is a first effort in making it a primary checklists (where the requirements independent from the technology used). The RSBI NWG is working closely with the MSI biological working group, for the generation of a new parent document with a generic specification.</General_Comments>		</General_Features>		<Contact_Person>			<Full_Name>Philippe Rocca-Serra</Full_Name>			<Email>rocca@ebi.ac.uk</Email>		</Contact_Person>		<Key_Concepts>			<Concept>Nutrigenomics experimental design</Concept>			<Concept>Biological Materials Description</Concept>			<Concept>Biological Materials Treatment</Concept>			<Concept>Diet Description</Concept>			<Concept>Biological endpoints</Concept>			<Concept>Toxicological assessments</Concept>		</Key_Concepts>		<Location_of_Documents>			<Description>The MIAME/Nutr checklist as a word doc</Description>			<URL>http://www.mged.org/Workgroups/rsbi/rsbidetail.html#rationale</URL>		</Location_of_Documents>	</MIMI>	<MIMI>		<MI_Checklist_Acronym>MIAME/Plant</MI_Checklist_Acronym>		<General_Features>			<Domain>Plant transcriptomics</Domain>			<Document_Type>Extension</Document_Type>			<Group>CAGE Consortium / EMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom</Group>			<Main_Website>http://www.ebi.ac.uk/at-miamexpress</Main_Website>			<MI_Checklist_Name>Minimum Information About a Microarray Experiment involving Plants</MI_Checklist_Name>			<Current_Version_Designation>1.0</Current_Version_Designation>			<Release_Date_for_Current_Version>2005-10</Release_Date_for_Current_Version>			<General_Comments>For large uploads the Tab2MAGE tool may be used.</General_Comments>		</General_Features>		<Contact_Person>			<Full_Name>Mohammadreza Shojatalab</Full_Name>			<Email>shoja@ebi.ac.uk + microarray-annot@ebi.ac.uk</Email>		</Contact_Person>		<Key_Concepts>			<Concept>MIAMExpress</Concept>		</Key_Concepts>		<Bibliography>			<PMID>16219923</PMID>			<DOI>10.1104/pp.105.063156</DOI>			<URL>http://www.plantphysiol.org/cgi/reprint/139/2/632</URL>		</Bibliography>		<Bibliography>			<PMID>16401339</PMID>			<DOI>10.1186/1746-4811-2-1</DOI>			<URL>http://www.plantmethods.com/content/pdf/1746-4811-2-1.pdf</URL>		</Bibliography>		<Location_of_Documents>			<Description>White paper MIAME/Plant</Description>			<URL>http://www.mged.org/Workgroups/MIAME/MIAME-plant_Dec2005.pdf</URL>		</Location_of_Documents>	</MIMI>	<MIMI>		<MI_Checklist_Acronym>MIAME/Tox</MI_Checklist_Acronym>		<General_Features>			<Domain>Toxicogenomics</Domain>			<Document_Type>Extension</Document_Type>			<Group>RSBI Toxicogenomics Working Group (TWG)</Group>			<Main_Website>http://www.mged.org/Workgroups/rsbi/rsbi.html</Main_Website>			<MI_Checklist_Name>Minimum Information about a array-based toxicogenomics experiment</MI_Checklist_Name>			<Current_Version_Designation>MIAME/Tox based on MIAME v1.1</Current_Version_Designation>			<Release_Date_for_Current_Version>2003-08</Release_Date_for_Current_Version>			<General_Comments>MIAME/Tox was developed to extend MIAME for array-based toxicogenomics experiments. The RSBI TWG, in collaboration with others, is in the process of generating a new parent document with a generic Tox specification.</General_Comments>		</General_Features>		<Contact_Person>			<Full_Name>Susanna-Assunta Sansone</Full_Name>			<Email>sansone@ebi.ac.uk</Email>		</Contact_Person>		<Key_Concepts>			<Concept>Toxicogenomic experimental design</Concept>			<Concept>Sample manipulations</Concept>			<Concept>Toxicological assessments</Concept>			<Concept>Clinical observations</Concept>			<Concept>Gross necropsy examination</Concept>			<Concept>Histopathology evaluation</Concept>			<Concept>Clinical pathology</Concept>		</Key_Concepts>		<Location_of_Documents>			<Description>The MIAME/Tox checklist as a word doc or pdf file</Description>			<URL>http://www.mged.org/Workgroups/rsbi/rsbidetail.html#rationale</URL>		</Location_of_Documents>	</MIMI>	<MIMI>		<MI_Checklist_Acronym>MIAPA</MI_Checklist_Acronym>		<General_Features>			<Domain>Phylogenetic Data</Domain>			<Document_Type>Primary Checklist</Document_Type>			<Group>MIAPA Working Group</Group>			<Main_Website>n/a</Main_Website>			<MI_Checklist_Name>Minimal Information About a Phylogenetic Analylsis</MI_Checklist_Name>			<Current_Version_Designation>In Development</Current_Version_Designation>			<Release_Date_for_Current_Version>In Development</Release_Date_for_Current_Version>			<General_Comments>Working group is soliciting input from the phylogenetics community</General_Comments>		</General_Features>		<Contact_Person>			<Full_Name>Jim Leebens-Mack</Full_Name>			<Email>jleebensmack@plantbio.uga.edu</Email>		</Contact_Person>		<Key_Concepts>			<Concept>Publication</Concept>			<Concept>Objective of Study</Concept>			<Concept>DNA and Amino Acid Sequences</Concept>			<Concept>Alignment with annoations for character masking</Concept>			<Concept>Alignment procedures</Concept>			<Concept>Phylogenetic analysis methods including parameter values</Concept>			<Concept>Source organism taxonomy</Concept>			<Concept>Inferred tree(s)</Concept>		</Key_Concepts>		<Bibliography>			<PMID>16901231</PMID>			<DOI>10.1089/omi.2006.10.231</DOI>			<URL>http://www.liebertonline.com/doi/abs/10.1089/omi.2006.10.231</URL>		</Bibliography>	</MIMI>	<MIMI>		<MI_Checklist_Acronym>MIAPAR</MI_Checklist_Acronym>		<General_Features>			<Domain>Protein affinity reagents</Domain>			<Document_Type>Primary publication describing standard</Document_Type>			<Group>HUPO Proteomics Standards Initiative — Molecular Interaction Workgroup</Group>			<Main_Website>http://www.psidev.info/index.php?q=node/277</Main_Website>			<MI_Checklist_Name>Minimum Information about a Protein Affinity Reagent</MI_Checklist_Name>			<Current_Version_Designation>1</Current_Version_Designation>			<Release_Date_for_Current_Version>2006-10</Release_Date_for_Current_Version>			<General_Comments>MIAPAR is intended to be used as a guideline for experimentalists who wish to unambiguously describe protein affinity reagents and their protein targets (including but not limited to Ab/Ag interactions). It specifies the minimum amount of information which should be present, or directly traceable, in any publication, database entry or commercial catalogue describing either the production or use of affinity reagents such as antibodies, aptamers, protein scaffolds etc. The MIAPAR paper is out to consultation and unsolicited comments are welcome; please send any feedback to orchard[@]ebi.ac.uk. The Minimum Information about a Protein Affinity Reagent MIAPAR is available for public comment.</General_Comments>		</General_Features>		<Contact_Person>			<Full_Name>Sandra Orchard</Full_Name>			<Email>orchard[@]ebi.ac.uk</Email>		</Contact_Person>		<Key_Concepts>			<Concept>protein affinity reagent</Concept>			<Concept>antibody</Concept>			<Concept>Ab</Concept>			<Concept>antigen</Concept>			<Concept>Ag</Concept>			<Concept>aptamer</Concept>			<Concept>protein scaffold</Concept>		</Key_Concepts>		<Location_of_Documents>			<Description>Draft of the MIAPAR paper</Description>			<URL>http://www.psidev.info/files/protein-binder/doc/manuscripts/MIAPAR.doc</URL>		</Location_of_Documents>	</MIMI>	<MIMI>		<MI_Checklist_Acronym>MIAPE</MI_Checklist_Acronym>		<General_Features>			<Domain>Proteomics</Domain>			<Document_Type>Primary guidelines</Document_Type>			<Group>Human Proteome Organization (HUPO) — Proteomics Standards Initiative (PSI)</Group>			<Main_Website>http://www.psidev.info/</Main_Website>			<MI_Checklist_Name>Minimum Information About a Proteomics Experiment</MI_Checklist_Name>			<Current_Version_Designation>n/a</Current_Version_Designation>			<Release_Date_for_Current_Version>n/a</Release_Date_for_Current_Version>			<General_Comments>Note that MIAPE is composed of a 'parent' document laying out principles and a number of 'modules' each of which applies to a particular technology (in effect these are each a set of guidelines in their own right), therefore a single version/date is inappropriate.</General_Comments>		</General_Features>		<Contact_Person>			<Full_Name>Chris Taylor</Full_Name>			<Email>chris.taylor@ebi.ac.uk</Email>		</Contact_Person>		<Contact_Person>			<Full_Name>Pierre-Alain Binz</Full_Name>			<Email>pierre-alain.binz@isb-sib.ch</Email>		</Contact_Person>		<Contact_Person>			<Full_Name>Frank Gibson</Full_Name>			<Email>frank.gibson@newcastle.ac.uk</Email>		</Contact_Person>		<Key_Concepts>			<Concept>proteome</Concept>			<Concept>protein</Concept>			<Concept>peptide</Concept>			<Concept>proteomics</Concept>			<Concept>mass spectrometry</Concept>			<Concept>electrophoresis</Concept>			<Concept>chromatography</Concept>			<Concept>proteoinformatics</Concept>		</Key_Concepts>		<Bibliography>			<PMID>17687369</PMID>			<DOI>10.1038/nbt1329</DOI>			<URL>http://www.nature.com/nbt/journal/v25/n8/abs/nbt1329.html</URL>		</Bibliography>		<Bibliography>			<PMID>16901219</PMID>			<DOI>10.1089/omi.2006.10.145</DOI>			<URL>http://www.liebertonline.com/doi/abs/10.1089/omi.2006.10.145</URL>		</Bibliography>		<Bibliography>			<PMID>17031794</PMID>			<DOI>10.1002/pmic.200600537</DOI>			<URL>http://www3.interscience.wiley.com/cgi-bin/abstract/113390667/ABSTRACT</URL>		</Bibliography>		<Bibliography>			<PMID>17031795</PMID>			<DOI>10.1002/pmic.200600549</DOI>			<URL>http://www3.interscience.wiley.com/cgi-bin/abstract/113390668/ABSTRACT</URL>		</Bibliography>		<Location_of_Documents>			<Description>MIAPE Parent Document and all modules</Description>			<URL>http://www.psidev.info/miape/</URL>		</Location_of_Documents>	</MIMI>	<MIMI>		<MI_Checklist_Acronym>MIAPepAE</MI_Checklist_Acronym>		<General_Features>			<Domain>Peptide/Protein Array</Domain>			<Document_Type>Primary Checklist, Good practice guide</Document_Type>			<Group>CPGR/EMBNET</Group>			<Main_Website>n/a</Main_Website>			<MI_Checklist_Name>Minimum Information About a Peptide Array Experiment</MI_Checklist_Name>			<Current_Version_Designation>0.1</Current_Version_Designation>			<Release_Date_for_Current_Version>2011-05</Release_Date_for_Current_Version>			<General_Comments>Current work also include minimum information about protein array. MIAProAE (Minimum Information About Protein Array Experiment) is to follow. Contact jkumuthini@gmail.com</General_Comments>		</General_Features>		<Contact_Person>			<Full_Name>Dr. Judit Kumuthini</Full_Name>			<Email>jkumuthini[@]gmail.com</Email>		</Contact_Person>		<Key_Concepts>			<Concept>protein/peptide information</Concept>			<Concept>sample information</Concept>		</Key_Concepts>		<Location_of_Documents>			<Description>Word file with the checklist of relevant MI</Description>			<URL>n/a</URL>		</Location_of_Documents>	</MIMI>	<MIMI>		<MI_Checklist_Acronym>MIARE</MI_Checklist_Acronym>		<General_Features>			<Domain>RNA interference</Domain>			<Document_Type>primary checklist</Document_Type>			<Group>MIARE Informatics WorkGroup</Group>			<Main_Website>http://www.miare.org</Main_Website>			<MI_Checklist_Name>Minimum Information About a RNAi Experiment</MI_Checklist_Name>			<Current_Version_Designation>0.8.0</Current_Version_Designation>			<Release_Date_for_Current_Version>2011-05</Release_Date_for_Current_Version>			<General_Comments>Draft Reporting Guidelines</General_Comments>		</General_Features>		<Contact_Person>			<Full_Name>Nigel Binns</Full_Name>			<Email>n.binns@ed.ac.uk</Email>		</Contact_Person>		<Key_Concepts>			<Concept>RNA interference</Concept>			<Concept>siRNA</Concept>			<Concept>shRNA</Concept>		</Key_Concepts>		<Location_of_Documents>			<Description>MIARE Reporting Guidelines</Description>			<URL>http://sourceforge.net/projects/miare</URL>		</Location_of_Documents>	</MIMI>	<MIMI>		<MI_Checklist_Acronym>MIASE</MI_Checklist_Acronym>		<General_Features>			<Domain>Systems Biology</Domain>			<Document_Type>Primary checklist</Document_Type>			<Group>BioModels.net</Group>			<Main_Website>http://www.ebi.ac.uk/compneur-srv/miase/</Main_Website>			<MI_Checklist_Name>Minimum Information About a Simulation Experiment</MI_Checklist_Name>			<Current_Version_Designation>n/a</Current_Version_Designation>			<Release_Date_for_Current_Version>n/a</Release_Date_for_Current_Version>			<General_Comments>MIASE is developed concurrently with a corresponding Object-Model and supporting software. The OM has been submitted for publication.</General_Comments>		</General_Features>		<Contact_Person>			<Full_Name>Nicolas Le Novère</Full_Name>			<Email>lenov[@]ebi.ac.uk</Email>		</Contact_Person>		<Contact_Person>			<Full_Name>Dagmar Koehn</Full_Name>			<Email>dagmar[@]ebi.ac.uk</Email>		</Contact_Person>		<Key_Concepts>			<Concept>simulation</Concept>			<Concept>modeling</Concept>			<Concept>numerical analysis</Concept>		</Key_Concepts>		<Location_of_Documents>			<Description>SED-ML, a data-model to encode a subset of MIASE information</Description>			<URL>http://www.ebi.ac.uk/compneur-srv/sed-ml/</URL>		</Location_of_Documents>		<Location_of_Documents>			<Description>CellML Simulation Metadata specification</Description>			<URL>http://www.cellml.org/specifications/metadata/simulations</URL>		</Location_of_Documents>	</MIMI>	<MIMI>		<MI_Checklist_Acronym>MIASPPE</MI_Checklist_Acronym>		<General_Features>			<Domain>Phosphoproteomics</Domain>			<Document_Type>Checklist</Document_Type>			<Group>CSIC/UAB Proteomics Laboratory, Spanish National Research Council</Group>			<Main_Website>http://proteomica.uab.cat/</Main_Website>			<MI_Checklist_Name>Minimum Information About Sample Preparation for a Phosphoproteomics Experiment</MI_Checklist_Name>			<Current_Version_Designation>0.91</Current_Version_Designation>			<Release_Date_for_Current_Version>2009-03</Release_Date_for_Current_Version>			<General_Comments>Early development</General_Comments>		</General_Features>		<Contact_Person>			<Full_Name>Montserrat Carrascal Pérez</Full_Name>			<Email>mcpbam@iibb.csic.es</Email>		</Contact_Person>		<Contact_Person>			<Full_Name>Joaquim Abian</Full_Name>			<Email>Joaquim.Abian.csic@uab.car</Email>		</Contact_Person>		<Key_Concepts>			<Concept>proteomics</Concept>			<Concept>phosphoproteomics</Concept>			<Concept>sample preparation</Concept>			<Concept>phosphopeptide enrichment</Concept>			<Concept>cell culture</Concept>		</Key_Concepts>		<Bibliography>			<PMID>18986192</PMID>			<DOI>10.1038/npre.2009.3131.1</DOI>			<URL>http://pubs.acs.org/doi/abs/10.1021/pr800500r</URL>		</Bibliography>		<Location_of_Documents>			<Description>The MIASPPE checklist</Description>			<URL>http://code.google.com/p/lp-csic-uab-documents/</URL>		</Location_of_Documents>	</MIMI>	<MIMI>		<MI_Checklist_Acronym>MIATA</MI_Checklist_Acronym>		<General_Features>			<Domain>T Cell Assays in Immune Monitoring</Domain>			<Document_Type>Initial guidelines</Document_Type>			<Group>Main initiators of this effort are the Cancer Vaccine Consortium (CVC/CRI), the Cancer Immunotherapy Consortium (CIMT), and the Immune Monitoring Center at Stanford University. The final guidelines are envisioned to be an immune monitoring field-wide accomplishment.</Group>			<Main_Website>http://www.miataproject.org/</Main_Website>			<MI_Checklist_Name>Minimal Information About T Cell Assays</MI_Checklist_Name>			<Current_Version_Designation>0.0</Current_Version_Designation>			<Release_Date_for_Current_Version>2009-10-16</Release_Date_for_Current_Version>			<General_Comments>MIATA modules listed on web site for public consultation; comments posted also on web site, update of v0.0 in Q1-2010; first public workshop on March 20, 2010 at CVC meeting in Washington, DC (http://www.cancerresearch.org/programs/research/cancer-vaccine-consortium/meetings.html  http://www.cancerresearch.org/programs/research/cancer-vaccine-consortium/meetings.html) effect these are each a set of guidelines in their own right), therefore a single version/date is inappropriate.</General_Comments>		</General_Features>		<Contact_Person>			<Full_Name>Sylvia Janetzki, MD</Full_Name>			<Email>sylvia@zellnet.com</Email>		</Contact_Person>		<Contact_Person>			<Full_Name>Cedrik Britten, MD</Full_Name>			<Email>britten@uni-mainz.de</Email>		</Contact_Person>		<Key_Concepts>			<Concept>Sample preparation</Concept>			<Concept>Assay</Concept>			<Concept>Data acquisition</Concept>			<Concept>Interpretation of results</Concept>			<Concept>Lab environment</Concept>		</Key_Concepts>		<Bibliography>			<PMID>19833080</PMID>			<DOI>10.1016/j.immuni.2009.09.007</DOI>			<URL>http://download.cell.com/immunity/pdf/PIIS1074761309004191.pdf?intermediate=true</URL>		</Bibliography>		<Location_of_Documents>			<Description>MIATA introduction</Description>			<URL>http://download.cell.com/immunity/pdf/PIIS1074761309004191.pdf?intermediate=true</URL>		</Location_of_Documents>	</MIMI>	<MIMI>		<MI_Checklist_Acronym>MICEE</MI_Checklist_Acronym>		<General_Features>			<Domain>Cardiac Electrophysiology</Domain>			<Document_Type>Primary Checklist</Document_Type>			<Group>MICEE.org</Group>			<Main_Website>http://www.micee.org/</Main_Website>			<MI_Checklist_Name>Minimum Information about a Cardiac Electrophysiology Experiment</MI_Checklist_Name>			<Current_Version_Designation>0.1</Current_Version_Designation>			<Release_Date_for_Current_Version>2010-09-01</Release_Date_for_Current_Version>			<General_Comments>This is a proposed Minimum Information Standard for recording, annotating, and reporting cardiac electrophysiology data for consideration and iteration by the research community.</General_Comments>		</General_Features>		<Contact_Person>			<Full_Name>T Alexander Quinn</Full_Name>			<Email>t.quinn[@]imperial.ac.uk</Email>		</Contact_Person>		<Key_Concepts>			<Concept>Cardiac</Concept>			<Concept>Electrophsyiology</Concept>		</Key_Concepts>		<Location_of_Documents>			<Description>To be published in an upcoming issue of Progress in Biophysics and Molecular Biology</Description>			<URL>n/a</URL>		</Location_of_Documents>	</MIMI>	<MIMI>		<MI_Checklist_Acronym>MIDE</MI_Checklist_Acronym>		<General_Features>			<Domain>Pharmacogenomics</Domain>			<Document_Type>Primary Checklist</Document_Type>			<Group>Bioinformatics unit, CPGR (Centre for Proteomic and Genomic Research)</Group>			<Main_Website>http://www.cpgr.org.za/</Main_Website>			<MI_Checklist_Name>Minimum Information required for a DMET Experiment</MI_Checklist_Name>			<Current_Version_Designation>0.1</Current_Version_Designation>			<Release_Date_for_Current_Version>2011-06</Release_Date_for_Current_Version>			<General_Comments>Current work also include minimum information about protein array. MIAProAE (Minimum Information About Protein Array Experiment) is to follow. Contact jkumuthini@gmail.com</General_Comments>		</General_Features>		<Contact_Person>			<Full_Name>Dr. Judit Kumuthini</Full_Name>			<Email>jkumuthini[@]gmail.com</Email>		</Contact_Person>		<Key_Concepts>			<Concept>Data curation</Concept>			<Concept>Data format</Concept>		</Key_Concepts>		<Location_of_Documents>			<Description>To be published</Description>			<URL>n/a</URL>		</Location_of_Documents>	</MIMI>	<MIMI>		<MI_Checklist_Acronym>MIFlowCyt</MI_Checklist_Acronym>		<General_Features>			<Domain>Flow cytometry</Domain>			<Document_Type>Primary checklist</Document_Type>			<Group>Flow Cytometry Consortium</Group>			<Main_Website>http://flowcyt.sourceforge.net/</Main_Website>			<MI_Checklist_Name>Minimum Information for a Flow Cytometry Experiment</MI_Checklist_Name>			<Current_Version_Designation>0.3.05</Current_Version_Designation>			<Release_Date_for_Current_Version>2007-01-25</Release_Date_for_Current_Version>			<General_Comments>String</General_Comments>		</General_Features>		<Contact_Person>			<Full_Name>Ryan Brinkman</Full_Name>			<Email>rbrinkman@bccrc.ca</Email>		</Contact_Person>		<Key_Concepts>			<Concept>Experiment Overview</Concept>			<Concept>Flow Sample Description</Concept>			<Concept>Instrument Details</Concept>			<Concept>Data Analysis</Concept>		</Key_Concepts>		<Location_of_Documents>			<URL>http://flowcyt.sourceforge.net/miflowcyt/</URL>		</Location_of_Documents>	</MIMI>	<MIMI>		<MI_Checklist_Acronym>MIfMRI</MI_Checklist_Acronym>		<General_Features>			<Domain>Functional magnetic resonance imaging</Domain>			<Document_Type>Checklist</Document_Type>			<Group>fMRI Methods Working Group</Group>			<Main_Website>http://www.fmrimethods.org/index.php/Main_Page</Main_Website>			<MI_Checklist_Name>Minimum Information about an fMRI Study</MI_Checklist_Name>			<Current_Version_Designation>1.0</Current_Version_Designation>			<Release_Date_for_Current_Version>2010-08-14</Release_Date_for_Current_Version>			<General_Comments>This is a wiki-based checklist so there are no fixed releases</General_Comments>		</General_Features>		<Contact_Person>			<Full_Name>Russell Poldrack</Full_Name>			<Email>poldrack@mail.utexas.edu</Email>		</Contact_Person>		<Key_Concepts>			<Concept>Experimental design</Concept>			<Concept>Data acquisition</Concept>			<Concept>Data preprocessing</Concept>			<Concept>Statistical inference</Concept>			<Concept>Statistical modeling</Concept>			<Concept>Figures and tables</Concept>			<Concept>Human subjects</Concept>		</Key_Concepts>		<Bibliography>			<PMID>18191585</PMID>			<DOI>10.1016/j.neuroimage.2007.11.048</DOI>			<URL>http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2287206/?tool=pubmed</URL>		</Bibliography>	</MIMI>	<MIMI>		<MI_Checklist_Acronym>MIGen</MI_Checklist_Acronym>		<General_Features>			<Domain>Genotyping and Association Analysis</Domain>			<Document_Type>Primary Checklist</Document_Type>			<Group>BISC/ImmPort</Group>			<Main_Website>http://migen.sourceforge.net/</Main_Website>			<MI_Checklist_Name>Minimum Information About a Genotyping Experiment</MI_Checklist_Name>			<Current_Version_Designation>ImmPort version 2.1</Current_Version_Designation>			<Release_Date_for_Current_Version>Not yet released to public</Release_Date_for_Current_Version>		</General_Features>		<Contact_Person>			<Full_Name>Richard H. Scheuermann</Full_Name>			<Email>Richard.Scheuermann@utsouthwestern.edu</Email>		</Contact_Person>		<Contact_Person>			<Full_Name>Jie Huang</Full_Name>			<Email>jie.huang@utsouthwestern.edu</Email>		</Contact_Person>		<Key_Concepts>			<Concept>Experiment Technique &amp; Reagents</Concept>			<Concept>Experiment Design</Concept>			<Concept>Sample Source &amp; Description</Concept>			<Concept>Subject Information</Concept>			<Concept>Genotype Results</Concept>			<Concept>Phenotypes</Concept>			<Concept>Association &amp; Linkage Disequilibrium Analysis Results</Concept>		</Key_Concepts>	</MIMI>	<MIMI>		<MI_Checklist_Acronym>MIGS</MI_Checklist_Acronym>		<General_Features>			<Domain>genomics</Domain>			<Document_Type>primary checklist</Document_Type>			<Group>Genomic Standards Consortium</Group>			<Main_Website>http://gensc.sf.net</Main_Website>			<MI_Checklist_Name>Minimum Information about a Genome Sequence</MI_Checklist_Name>			<Current_Version_Designation>1.1</Current_Version_Designation>			<Release_Date_for_Current_Version>2006-11</Release_Date_for_Current_Version>			<General_Comments>We are working towards a stable version by end of 2007 but we are already collecting MIGS-compliant reports at http://gensc.sf.net/ </General_Comments>		</General_Features>		<Contact_Person>			<Full_Name>Peter Sterk</Full_Name>			<Email>sterk@ebi.ac.uk</Email>		</Contact_Person>		<Key_Concepts>			<Concept>genome</Concept>			<Concept>metagenome</Concept>			<Concept>organism</Concept>			<Concept>phenotype</Concept>			<Concept>environment</Concept>			<Concept>sample processing</Concept>			<Concept>data processing</Concept>			<Concept>eukarya</Concept>			<Concept>bacteria</Concept>			<Concept>archaea</Concept>			<Concept>plasmids</Concept>			<Concept>organelles</Concept>			<Concept>viruses</Concept>		</Key_Concepts>		<Bibliography>			<PMID>16901213</PMID>			<DOI>10.1089/omi.2006.10.100</DOI>			<URL>http://www.liebertonline.com/doi/abs/10.1089/omi.2006.10.100</URL>		</Bibliography>		<Bibliography>			<PMID>n/a</PMID>			<DOI>10.1002/cfg.494</DOI>			<URL>http://www.hindawi.com/GetArticle.aspx?doi=10.1002/cfg.494</URL>		</Bibliography>		<Bibliography>			<PMID>15817771</PMID>			<DOI>10.1099/mic.0.27914-0</DOI>			<URL>http://mic.sgmjournals.org/cgi/content/full/151/4/1016?view=long&amp;pmid=15817771</URL>		</Bibliography>		<Location_of_Documents>			<Description>The MIGS checklist as a table</Description>			<URL>http://darwin.nerc-oxford.ac.uk/gc_wiki/index.php/MIGS</URL>		</Location_of_Documents>	</MIMI>	<MIMI>		<MI_Checklist_Acronym>MIIDI</MI_Checklist_Acronym>		<General_Features>			<Domain>Infectious disease investigation</Domain>			<Document_Type>Primary guidelines</Document_Type>			<Group>MIIDI Working Group</Group>			<Main_Website>http://www/miidi.org/</Main_Website>			<MI_Checklist_Name>Minimal Information standard for reporting an Infectious Disease Investigation</MI_Checklist_Name>			<Current_Version_Designation>1.0</Current_Version_Designation>			<Release_Date_for_Current_Version>2012-01</Release_Date_for_Current_Version>			<General_Comments>The purpose of MIIDI (the Minimal Information standard for reporting an Infectious Disease Investigation) is to facilitate the creation of metadata that will enable description and resource discovery of datasets and articles of relevance to infectious disease investigations, for the benefit of epidemiologists, those undertaking systematic reviews, and many others.</General_Comments>		</General_Features>		<Contact_Person>			<Full_Name>David Shotton</Full_Name>			<Email>david.shotton@zoo.ox.ac.uk</Email>		</Contact_Person>		<Contact_Person>			<Full_Name>Tanya Gray</Full_Name>			<Email>sterk@ebi.ac.uk</Email>		</Contact_Person>		<Key_Concepts>			<Concept>epidemiology</Concept>			<Concept>infectious disease</Concept>			<Concept>investigation reporting</Concept>			<Concept>publication</Concept>		</Key_Concepts>		<Location_of_Documents>			<Description>Workshop reports</Description>			<URL>http://www.miidi.org/wiki/index.php?title=Publications</URL>		</Location_of_Documents>	</MIMI>	<MIMI>		<MI_Checklist_Acronym>MIMARKS</MI_Checklist_Acronym>		<General_Features>			<Domain>Diversity</Domain>			<Document_Type>Primary checklist, guideline</Document_Type>			<Group>MIMARKS working group of the Genomic Standards Consortium</Group>			<Main_Website>http://gensc.org/gc_wiki/index.php/MIMARKS</Main_Website>			<MI_Checklist_Name>Minimum Information for MARKer gene Sequences</MI_Checklist_Name>			<Current_Version_Designation>1.03</Current_Version_Designation>			<Release_Date_for_Current_Version>2008-11-03</Release_Date_for_Current_Version>		</General_Features>		<Contact_Person>			<Full_Name>Frank Oliver Glöckner</Full_Name>			<Email>fog@mpi-bremen.de</Email>		</Contact_Person>		<Contact_Person>			<Full_Name>Pelin Yilmaz</Full_Name>			<Email>pyilmaz@mpi-bremen.de</Email>		</Contact_Person>		<Contact_Person>			<Full_Name>Renzo Kottmann</Full_Name>			<Email>rkottman@mpi-bremen.de</Email>		</Contact_Person>		<Key_Concepts>			<Concept>contextual data</Concept>			<Concept>environment</Concept>			<Concept>diversity</Concept>			<Concept>ribosomal RNA</Concept>			<Concept>functional genes</Concept>			<Concept>databases</Concept>		</Key_Concepts>		<Bibliography>			<PMID>18786793</PMID>			<DOI>10.1016/j.syapm.2008.08.003</DOI>			<URL>http://www.sciencedirect.com/science?_ob=ArticleURL&amp;_udi=B7GVX-4TDJG95-2&amp;_user=776054&amp;_rdoc=1&amp;_fmt=&amp;_orig=search&amp;_sort=d&amp;view=c&amp;_acct=C000042238&amp;_version=1&amp;_urlVersion=0&amp;_userid=776054&amp;md5=e96007e84d9120c32d355470bb9b782d</URL>		</Bibliography>		<Location_of_Documents>			<Description>Workflow, Excel sheet, software</Description>			<URL>http://www.arb-silva.de/projects/contextual-data/</URL>		</Location_of_Documents>	</MIMI>	<MIMI>		<MI_Checklist_Acronym>MIMIx</MI_Checklist_Acronym>		<General_Features>			<Domain>Proteomics - Molecular Interactions</Domain>			<Document_Type>Primary publication describing standard</Document_Type>			<Group>HUPO Proteomics Standards Initiative - Molecular Interaction Workgroup</Group>			<Main_Website>http://psidev.sf.net</Main_Website>			<MI_Checklist_Name>Minimum Information about a Molecular Interaction Experiment</MI_Checklist_Name>			<Current_Version_Designation>1.0</Current_Version_Designation>			<Release_Date_for_Current_Version>2006-10</Release_Date_for_Current_Version>			<General_Comments>Currently available for community review on NBT website</General_Comments>		</General_Features>		<Contact_Person>			<Full_Name>Sandra Orchard</Full_Name>			<Email>orchard@ebi.ac.uk</Email>		</Contact_Person>		<Key_Concepts>			<Concept>Identitiy of participating molecules</Concept>			<Concept>Interaction Detection Method</Concept>			<Concept>Paticipation Detection Method</Concept>			<Concept>Role of molecules in experiment</Concept>		</Key_Concepts>		<Bibliography>			<PMID>14755292</PMID>			<DOI>10.1038/nbt926</DOI>			<URL>http://www.nature.com/nbt/journal/v22/n2/abs/nbt926.html</URL>		</Bibliography>		<Location_of_Documents>			<Description>PSI-MI2.5 XMK interchange standard</Description>			<URL>http://psidev.sourceforge.net/mi/rel25/</URL>		</Location_of_Documents>		<Location_of_Documents>			<Description>PSI-MI controlled vocabularies</Description>			<URL>http://psidev.sourceforge.net/mi/rel25/#cv</URL>		</Location_of_Documents>	</MIMI>	<MIMI>		<MI_Checklist_Acronym>MIMPP</MI_Checklist_Acronym>		<General_Features>			<Domain>Mouse Phenotyping Procedures</Domain>			<Document_Type>Primary guidelines</Document_Type>			<Group>The Mouse Phenotype Database Integration Consortium</Group>			<Main_Website>http://www.interphenome.org</Main_Website>			<MI_Checklist_Name>Minimal Information for Mouse Phenotyping Procedures</MI_Checklist_Name>			<Current_Version_Designation>n/a</Current_Version_Designation>			<Release_Date_for_Current_Version>2007</Release_Date_for_Current_Version>			<General_Comments>XML Schema and preliminary guidelines released, minimal information checklist to follow</General_Comments>		</General_Features>		<Contact_Person>			<Full_Name>Ann-Marie Mallon</Full_Name>			<Email>a.mallon@har.mrc.ac.uk</Email>		</Contact_Person>		<Bibliography>			<PMID>17436037</PMID>			<DOI>10.1007/s00335-007-9004-x</DOI>			<URL>http://www.springerlink.com/content/pl81879683462347/</URL>		</Bibliography>	</MIMI>	<MIMI>		<MI_Checklist_Acronym>MINEMO</MI_Checklist_Acronym>		<General_Features>			<Domain>Human EEG/MEG</Domain>			<Document_Type>XML, TAB</Document_Type>			<Group>Neural ElectroMagnetic Ontologies (NEMO)</Group>			<Main_Website>http://nemo.nic.uoregon.edu/</Main_Website>			<MI_Checklist_Name>Minimal Information for Neural ElectroMagnetic Ontologies</MI_Checklist_Name>			<Current_Version_Designation>v.05b</Current_Version_Designation>			<Release_Date_for_Current_Version>2010-07-01</Release_Date_for_Current_Version>			<General_Comments>External collaborators: Maryann, Martone (NIF), Jeff Grethe (HeadIT), Scott Makeig (EEGLAB), Jessica Turner (BIRN), Angela Laird (BrainMap).</General_Comments>		</General_Features>		<Contact_Person>			<Full_Name>Gwen A. Frishkoff</Full_Name>			<Email>gfrishkoff@gsu.edu</Email>		</Contact_Person>		<Key_Concepts>			<Concept>EEG</Concept>			<Concept>MEG</Concept>			<Concept>ERP</Concept>		</Key_Concepts>		<Bibliography>			<PMID>N/A</PMID>			<DOI>10.1038/npre.2009.3458.1</DOI>			<URL>http://precedings.nature.com/documents/3458/version/1</URL>		</Bibliography>		<Location_of_Documents>			<Description>NEMO Documentation (Publications, TR, Presentations, References, Meeting Notes)</Description>			<URL>http://nemo.nic.uoregon.edu/wiki/Documentation</URL>		</Location_of_Documents>	</MIMI>	<MIMI>		<MI_Checklist_Acronym>MINI</MI_Checklist_Acronym>		<General_Features>			<Domain>Neuroscience - Electrophysiology</Domain>			<Document_Type>Primary checklist</Document_Type>			<Group>CARMEN</Group>			<Main_Website>http://www.carmen.org.uk/</Main_Website>			<MI_Checklist_Name>Minimum Information about a Neuroscience Investigation</MI_Checklist_Name>			<Current_Version_Designation>0.1</Current_Version_Designation>			<Release_Date_for_Current_Version>n/a</Release_Date_for_Current_Version>			<General_Comments>This module identifies the minimum information required to report the use of electrophysiology in a neuroscience study.</General_Comments>		</General_Features>		<Contact_Person>			<Full_Name>Frank Gibson</Full_Name>			<Email>frank.gibson@ncl.ac.uk</Email>		</Contact_Person>		<Key_Concepts>			<Concept>electrophysiology</Concept>			<Concept>neuroscience</Concept>		</Key_Concepts>	</MIMI>	<MIMI>		<MI_Checklist_Acronym>MINIMESS</MI_Checklist_Acronym>		<General_Features>			<Domain>Metagenomics and metatranscriptomics</Domain>			<Document_Type>Primary Guidelines/Checklist</Document_Type>			<Group>MINIMESS working group</Group>			<Main_Website>n/a</Main_Website>			<MI_Checklist_Name>Minimal Metagenome Sequence Analysis Standard</MI_Checklist_Name>			<Current_Version_Designation>1</Current_Version_Designation>			<Release_Date_for_Current_Version>2007-10</Release_Date_for_Current_Version>			<General_Comments>A proposed set of minimal standard analyses necessary for proper interpretation of meta-omic data and to allow comparative metagenomics and -transcriptomics.</General_Comments>		</General_Features>		<Contact_Person>			<Full_Name>Jeroen Raes</Full_Name>			<Email>raes@embl.de</Email>		</Contact_Person>		<Bibliography>			<PMID>17936679</PMID>			<DOI>10.1016/j.mib.2007.09.001</DOI>			<URL>http://www.ncbi.nlm.nih.gov/pubmed/17936679</URL>		</Bibliography>	</MIMI>	<MIMI>		<MI_Checklist_Acronym>MINSEQE</MI_Checklist_Acronym>		<General_Features>			<Domain>Functional Genomics including RNA-Seq and ChIP-Seq</Domain>			<Document_Type>Checklist</Document_Type>			<Group>MGED Society</Group>			<Main_Website>http://www.mged.org</Main_Website>			<MI_Checklist_Name>Minimal Information about a high throuput SEQuencing Experiment</MI_Checklist_Name>			<Current_Version_Designation>Draft</Current_Version_Designation>			<Release_Date_for_Current_Version>2008-04-01</Release_Date_for_Current_Version>			<General_Comments>The draft will be validated through submissions to repositories attempting to follow the MINSEQE checklist.</General_Comments>		</General_Features>		<Contact_Person>			<Full_Name>Chris Stoeckert</Full_Name>			<Email>stoeckrt@pcbi.upenn.edu</Email>		</Contact_Person>		<Key_Concepts>			<Concept>sample characteristcs</Concept>			<Concept>study design</Concept>			<Concept>sequence reads</Concept>			<Concept>processed data</Concept>			<Concept>protocols</Concept>			<Concept>general information</Concept>			<Concept>Draft proposal</Concept>		</Key_Concepts>		<Location_of_Documents>			<Description>Project page</Description>			<URL>http://www.mged.org/minseqe/</URL>		</Location_of_Documents>	</MIMI>	<MIMI>		<MI_Checklist_Acronym>MIPFE</MI_Checklist_Acronym>		<General_Features>			<Domain>Biochemistry</Domain>			<Document_Type>Primary check-list</Document_Type>			<Group>Cogentech</Group>			<Main_Website>http://mipfe.cogentech.it, http://mipfe.sourceforge.net</Main_Website>			<MI_Checklist_Name>Minimal Information for Protein Functional Evaluation</MI_Checklist_Name>			<Current_Version_Designation>0.1</Current_Version_Designation>			<Release_Date_for_Current_Version>2008-09-22</Release_Date_for_Current_Version>			<General_Comments>Early development</General_Comments>		</General_Features>		<Contact_Person>			<Full_Name>Dr Ario de Marco</Full_Name>			<Email>ario.demarco@ifom-ieo-campus.it</Email>		</Contact_Person>		<Contact_Person>			<Full_Name>Dr Davide Cittaro</Full_Name>			<Email>davide.cittaro@ifom-ieo-campus.it</Email>		</Contact_Person>		<Contact_Person>			<Full_Name>Dr Deborah Agostini</Full_Name>			<Email>deborah.agostini@ifom-ieo-campus.it</Email>		</Contact_Person>		<Key_Concepts>			<Concept>protein functional evaluation</Concept>			<Concept>recombinant proteins</Concept>			<Concept>protein and domain structure quality</Concept>		</Key_Concepts>		<Bibliography>			<PMID>18647423</PMID>			<DOI>10.1186/1475-2859-7-20</DOI>			<URL>http://www.microbialcellfactories.com/content/7/1/20</URL>		</Bibliography>		<Location_of_Documents>			<Description>World file with the check-list of relevant MI</Description>			<URL>http://mibbi.sourceforge.net/projects/MIPFE/docs/MIPFE_specification_v0.0.doc</URL>		</Location_of_Documents>	</MIMI>	<MIMI>		<MI_Checklist_Acronym>MIQAS</MI_Checklist_Acronym>		<General_Features>			<Domain>QTL and association analysis</Domain>			<Document_Type>Primary Guidelines</Document_Type>			<Group>Minimal Information for QTLs and Association Studies (MIQAS)</Group>			<Main_Website>http://miqas.sourceforge.net/</Main_Website>			<MI_Checklist_Name>Minimal Information for QTLs and Association Studies</MI_Checklist_Name>			<Current_Version_Designation>n/a</Current_Version_Designation>			<Release_Date_for_Current_Version>Not yet released to public</Release_Date_for_Current_Version>			<General_Comments>First release of checklist and XMLSchema are expected for late spring 2007.</General_Comments>		</General_Features>		<Contact_Person>			<Full_Name>Jan Aerts</Full_Name>			<Email>jan.aerts@bbsrc.ac.uk</Email>		</Contact_Person>		<Contact_Person>			<Full_Name>James Reecy</Full_Name>			<Email>jreecy@iastate.edu</Email>		</Contact_Person>		<Key_Concepts>			<Concept>QTL</Concept>			<Concept>association analysis</Concept>		</Key_Concepts>	</MIMI>	<MIMI>		<MI_Checklist_Acronym>MIQE</MI_Checklist_Acronym>		<General_Features>			<Domain>quantitative Polymerase Chain Reaction</Domain>			<Document_Type>Checklist</Document_Type>			<Group>RDML-Consortium</Group>			<Main_Website>http://www.rdml.org</Main_Website>			<MI_Checklist_Name>Minimum Information for Publication of Quantitative Real-Time PCR Experiments</MI_Checklist_Name>			<Current_Version_Designation>n/a</Current_Version_Designation>			<Release_Date_for_Current_Version>n/a</Release_Date_for_Current_Version>		</General_Features>		<Contact_Person>			<Full_Name>Andreas Untergasser</Full_Name>			<Email>andreas@untergasser.de</Email>		</Contact_Person>		<Contact_Person>			<Full_Name>Jo Vandesompele</Full_Name>			<Email>joke.vandesompele@ugent.be</Email>		</Contact_Person>		<Contact_Person>			<Full_Name>Jan Hellemans</Full_Name>			<Email>jan.hellemans@ugent.be</Email>		</Contact_Person>	</MIMI>	<MIMI>		<MI_Checklist_Acronym>MIRIAM</MI_Checklist_Acronym>		<General_Features>			<Domain>Modeling and Systems Biology</Domain>			<Document_Type>Primary guidelines</Document_Type>			<Group>BioModels.net</Group>			<Main_Website>http://biomodels.net/index.php?s=MIRIAM</Main_Website>			<MI_Checklist_Name>Minimal Information Required In the Annotation of biochemical Models</MI_Checklist_Name>			<Current_Version_Designation>N/A</Current_Version_Designation>			<Release_Date_for_Current_Version>2005-12-06</Release_Date_for_Current_Version>		</General_Features>		<Contact_Person>			<Full_Name>Dr Nicolas Le Novère</Full_Name>			<Email>lenov@ebi.ac.uk</Email>		</Contact_Person>		<Key_Concepts>			<Concept>Model curation</Concept>			<Concept>Model annotation</Concept>			<Concept>Kinetic simulation</Concept>		</Key_Concepts>		<Bibliography>			<PMID>16333295</PMID>			<DOI>10.1038/nbt1156</DOI>			<URL>http://www.nature.com/nbt/journal/v23/n12/abs/nbt1156.html</URL>		</Bibliography>		<Location_of_Documents>			<Description>MIRIAM abstract</Description>			<URL>http://mibbi.sourceforge.net/projects/MIRIAM/docs/MIRIAM_Abstract.txt</URL>		</Location_of_Documents>	</MIMI>	<MIMI>		<MI_Checklist_Acronym>MISFISHIE</MI_Checklist_Acronym>		<General_Features>			<Domain>Gene Expression Localization</Domain>			<Document_Type>Primary Checklist</Document_Type>			<Group>MGED MISFISHIE Working Group</Group>			<Main_Website>http://mged.sourceforge.net/misfishie/</Main_Website>			<MI_Checklist_Name>Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments</MI_Checklist_Name>			<Current_Version_Designation>1.0</Current_Version_Designation>			<Release_Date_for_Current_Version>2006-12-04</Release_Date_for_Current_Version>			<General_Comments>The MISFISHIE paper has now been published in Nature Biotechnology</General_Comments>		</General_Features>		<Contact_Person>			<Full_Name>Eric Deutsch</Full_Name>			<Email>edeutsch@systemsbiology.org</Email>		</Contact_Person>		<Key_Concepts>			<Concept>immunohistochemistry</Concept>			<Concept>in situ hybridization</Concept>		</Key_Concepts>		<Bibliography>			<PMID>18327244</PMID>			<DOI>10.1038/nbt1391</DOI>			<URL>http://www.nature.com/nbt/journal/v26/n3/full/nbt1391.html</URL>		</Bibliography>		<Bibliography>			<PMID>16901227</PMID>			<DOI>10.1089/omi.2006.10.205</DOI>			<URL>http://www.liebertonline.com/doi/abs/10.1089/omi.2006.10.205</URL>		</Bibliography>	</MIMI>	<MIMI>		<MI_Checklist_Acronym>STRENDA</MI_Checklist_Acronym>		<General_Features>			<Domain>Enzymology, in particular kinetic data</Domain>			<Document_Type>Primary checklist on reporting enzyme data</Document_Type>			<Group>STRENDA - Standards for Reporting Enzymology Data</Group>			<Main_Website>http://www.strenda.org/</Main_Website>			<MI_Checklist_Name>Level 1A: Required Data for the Methods Section for Publishing of Enzyme Kinetic Data; Level 1B: Additional Information Required for Reporting Enzyme Kinetic Data</MI_Checklist_Name>			<Current_Version_Designation>1.2</Current_Version_Designation>			<Release_Date_for_Current_Version>2006-06-16</Release_Date_for_Current_Version>			<General_Comments>The STRENDA Commission recognizes that any recommendations on the standardization of experimental conditions will require broad discussions within the scientific community. The platform of these discussions is the accompanying series of biannually held ESCEC symposia. The next symposium will be held in fall 2009. Both, the ESCEC symposia as well as the work of the STRENDA Commission are organized, coordinated and financially supported by the Beilstein Institut.</General_Comments>		</General_Features>		<Contact_Person>			<Full_Name>Carsten Kettner</Full_Name>			<Email>ckettner@beilstein-institut.de</Email>		</Contact_Person>		<Contact_Person>			<Full_Name>Keith Tipton</Full_Name>			<Email>ktipton@tcd.ie</Email>		</Contact_Person>		<Contact_Person>			<Full_Name>Dietmar Schomburg</Full_Name>			<Email>d.schomburg@tu-bs.de</Email>		</Contact_Person>		<Contact_Person>			<Full_Name>Thomas Leyh</Full_Name>			<Email>leyh@aecom.yu.edu</Email>		</Contact_Person>		<Contact_Person>			<Full_Name>Jan-Hendrik Hofmeyer</Full_Name>			<Email>jhsh@sun.ac.za</Email>		</Contact_Person>		<Contact_Person>			<Full_Name>Athel Cornish-Bowden</Full_Name>			<Email>acornish@ibsm.cnrs-mrs.fr</Email>		</Contact_Person>		<Contact_Person>			<Full_Name>Rolf Apweiler</Full_Name>			<Email>rolf.apweiler@ebi.ac.uk</Email>		</Contact_Person>		<Key_Concepts>			<Concept>Good Publication Practice</Concept>			<Concept>Standards of enzyme reporting enzyme data</Concept>			<Concept>Uniform assay standards</Concept>			<Concept>Development of an electronic submission tool according to the STRENDA guidelines</Concept>		</Key_Concepts>		<Bibliography>			<PMID>17822391</PMID>			<URL>http://www.bioinfo.de/isb/2007/07/S1/07/</URL>		</Bibliography>		<Bibliography>			<PMID>15653320</PMID>			<DOI>10.1016/j.tibs.2004.11.002</DOI>			<URL>http://www.sciencedirect.com/science?_ob=ArticleURL&amp;_udi=B6TCV-4DXT7XT-1&amp;_user=10&amp;_coverDate=01%2F01%2F2005&amp;_rdoc=1&amp;_fmt=&amp;_orig=search&amp;_sort=d&amp;view=c&amp;_acct=C000050221&amp;_version=1&amp;_urlVersion=0&amp;_userid=10&amp;md5=e9e3a90dc91e438ad9d7c6b0d205ea36</URL>		</Bibliography>		<Location_of_Documents>			<Description>Level 1A</Description>			<URL>http://www.strenda.org/documents.html</URL>		</Location_of_Documents>		<Location_of_Documents>			<Description>Level 1B</Description>			<URL>http://www.strenda.org/documents.html</URL>		</Location_of_Documents>	</MIMI>	<MIMI>		<MI_Checklist_Acronym>TBC</MI_Checklist_Acronym>		<General_Features>			<Domain>Biology, Biomedical Studies</Domain>			<MI_Checklist_Name>Tox Biology Checklist</MI_Checklist_Name>			<Current_Version_Designation>1</Current_Version_Designation>			<Release_Date_for_Current_Version>2007-04</Release_Date_for_Current_Version>			<General_Comments>This is available in a publication, PMID: 17442663</General_Comments>		</General_Features>		<Contact_Person>			<Full_Name>Jennifer Fostel</Full_Name>			<Email>fostel@niehs.nih.gov</Email>		</Contact_Person>		<Key_Concepts>			<Concept>Biology</Concept>			<Concept>Biomedical study</Concept>		</Key_Concepts>		<Bibliography>			<PMID>17442663</PMID>			<DOI>http://dx.doi.org/10.1093/toxsci/kfm090</DOI>			<URL>http://toxsci.oxfordjournals.org/cgi/content/full/99/1/26</URL>		</Bibliography>	</MIMI></MIBBI_Portal_Registrants>