MIMIx
1.1.2
http://www.psidev.info/index.php?q=wiki/Molecular_Interactions
Taken direct from the web-available version 1.1.2 (PDF) on 2011-06-05 by Chris Taylor (chrisftaylor@gmail.com)
Manuscript
A submission must contain the essential administrative information
Contact email
Publication title
First author
Publication identifier
Experiment
Each experimental setup should be described separately, with the following parameters
Host system
The host organism in which the interaction took place.
Identificaton by NCBI tax id. Further specification of cell line or tissue is recommended.
Yeast (TaxID:4932)
Interaction detection method
The method by which the interaction has been detected
two hybrid (MI:0018)
http://www.obofoundry.org/cgi-bin/detail.cgi?id=psi-mi
PSI-MI
MI:0001
interaction detection method
Root term
Participant Identification method
The method by which the interaction participants have been determined
nucleotide sequence (MI:0078)
http://www.obofoundry.org/cgi-bin/detail.cgi?id=psi-mi
PSI-MI
MI:0002
participant identification method
Root term
Interaction
Participant list
The list of all molecules participating in the interaction.
The list can contain one to many elements. Each molecule should be characterised by
Database
UniProt (MI:0486)
http://www.obofoundry.org/cgi-bin/detail.cgi?id=psi-mi
PSI-MI
MI:0444
database citation
Root term
Accession number from that database
P48551
Version number
should
Name
The common name of the molecule, as used in the manuscript
IFN-aRBL
The species of origin for the molecule
Identified by NCBI tax id.
9606
Biological role
The biological role of the molecule in the interaction.
neutral component (MI:0497)
http://www.obofoundry.org/cgi-bin/detail.cgi?id=psi-mi
PSI-MI
MI:0500
biological role
Root term
Experimental role
The experimental role of the molecule in the interaction.
bait (MI:0496)
http://www.obofoundry.org/cgi-bin/detail.cgi?id=psi-mi
PSI-MI
MI:0495
biological role
Root term
Confidence
A confidence value attributed to the interaction.
The confidence attribution system must be described in the manuscript. Ideally, the raw data for the confidence assignment should be available.
should